Morgane Thomas-Chollier - Ecole Normale Supérieure M2 ENS - September 2015
Computational analysis of cis-regulatory sequences
program of the week
:[
Lecture
]
Presentation of the course
:[
Lecture
]
Presentation of RSAT
:[
Lecture
]
Lectures by Sebastiaan Meijsing
:[
Lecture1
] [
Lecture2
] [
Lecture3
]
Motif discovery
:[
Lecture string-based
] [
Practical session 1
]
Discovering over-represented oligonucleotides
Discovering over-represented dyads (spaced motifs)
Matrices, Pattern matching and motif comparison
:[
Lecture
] [
Lecture2
][
Practical session 2
]
Motif descriptors
Search for a motif described as a consensus sequence
Search for a motif described as a matrix
Negative controls
:[
Lecture
]
Open analysis
: [
Analysis for the report
][
Report information
]
ChIP-seq
:[
Lecture
] [
Practical session 4
] [
Practical session 5
]
Peak-calling
Visualisation in genome browser and plots
Motif analysis
Peak annotation
Morgane Thomas-Chollier - Ecole Normale Supérieure mthomas[at]biologie.ens.fr
CSS adapted from Carl Herrmann