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Here you can find all the tools used in the artricle for chimera construction,
microarray analyses and consensus sequence hunting in promoter sequence.
In addition we gathered to all the databases used as references in the
whole work. A complete list of references on microarrays and bio-informatic
tools available is stored on our laboratory
web site link's page.
Databases :
- EUROSCARF
collection : European Saccharomyces cerevisiae Archive for
Functional Analysis
- MIPS
: Munich Information Center for Protein Sequences
- Phosphobase
: Database of consensus sequence for phosphorylation patterns
- SGD
: Saccharomyse Genome Database
- yMGV
: yeast Microarray Global Viewer
- YPD
: Yeast Proteome Database
Bio-informatic tools :
- Clustalw
: Multiple alignement software
- GenePix
3.0 software : Microarrays analysis
- Jexpress
: A java application for the analysis of gene expression data provided
by microarray experiments
- Motif
Sampler : An online tool used for searching for consensus patterns
in selected sequence
- RSA-tools
: Regulatory Sequence Analysis
- TreeView
: A cluster visualization software
- WebLogo
: An online tool for visualization of consensus sequence from an alignement
matrix
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